Get the right system titles from the 11.0 upgrade pack for your region (you can download it with 3DNUS by putting in 11.0.0-33 in the Title ID box, USA in the version box (assuming your 3DS region is USA) and selecting Old 3DS/New 3DS depending on which model you have)
This is just to make sure you don't install the wrong titles as that is a likely cause for your brick.
Example:
The errors are due to me having the update servers blocked so don't worry about that
You can find the title IDs of the titles you need on
http://3dbrew.org/wiki/Title_list
FBI should work for installing those few titles, but if the install fails on any of them you should report back. I had a few modded system titles installed and sysupdater would just error due to them when I was trying to update, after that I ran FBI to finish the install and it said a lot of system titles already existed and wouldn't install them, in the end I got a bricked emuNAND.