I also just bought a japanese 3ds and I am thinking of changing the region. After reading through this thread it looks like the best way to do this is by changing the region of the emuNAND while leaving the sysNAND intact. I think that is what I would do. However, I am curious if there are any downsides in always running with the emuNAND. Is the SD card going to handle that sort of stress for a long time? Also if something happens to the SD card, will I be able to create a new emuNAND (with a new SD card) using the sysNAND again?