Those go in the
sdmc:/3ds folder and work in conjunction with Homebrew Launcher (
sdmc:/boot.3dsx) through the Rosalina Menu injection.
Nintendo 3DS/
<ID0>/
<ID1 - first>
<ID1 - second>
Private/
Figure out which of the two
<ID1> subfolders your SysNAND defaults to. You'll have to move out the main
<ID1> so that GodMode9 can pick up on the other.
Boot to HOME Menu and check if your 3DS recognizes anything from the 2nd
<ID1>. Also check in System Settings for signs of missing tickets.
If that set is acknowledged, you may continue with the post #27 instructions. If the available free space on the card is less than the total amount to backup that
<ID1> set of titles into CIA, you may use the
CTRTransfer (Type D9) - Rebuild 3DS Database (Full) to get around the limitation as long as your card has a minimum of 4 GB free space.