1. Didn't know that.
2. If you're going to make the case that it'd be nice to have them anyways, then the guide should instruct us to include the starter.bin that comes with EmuNAND9. It includes a far better UI than the standard HBL and has even more potentially useful apps.
I only made the argument for keeping the copied over files to a minimum for the sake of confusion prevention. A smaller amount of files means less chance that the user gets confused about what an unmentioned file does, which lessens the likelihood of that confusion leading to user error and irreparable damage to the 3ds.
I'm all for the proliferation of homebrew and such. I just would rather only have the tools and parts needed for the job be included in the guide. It's like when you buy a piece of DIY furniture. If you receive more pieces than what are needed, then you'll second guess yourself about whether or not you put everything together properly. While the tools have come a long way in reducing the risk involved with the installation, we're still doing things that have the potential for bricking. A little focus on refining the toolset given out will go a long way to keeping the attention on the task at hand and following it to the letter. But that's just my opinion.
Side note, I think that a little more information should be given about how to remove TWL modification in the guide and when exactly they should be removed. The three main types that have existed during the 3DS lifecycle are Sudokuhax as DS Connection Settings, DS whitelist, and patched TWL_FIRM.