So you didnt have any problems like Memory Card corrupted or so with Shadow The Hedgehog?
Also, the cheats are supposed to be compatible since previous revisions, only thing is that I cannot test that right now. I downloaded the cheat codes from Wiiflow and ran Nintendon't from Wiiflow with Ocarina activated from there. I have to test the kenobiwii.bin file from the USB to see if that works.
For better compatibility I use the Nintendon't loader, that's the best way, when you pass me the cheat file, I will test it for you, but in 15 minutes I'll go to a English teacher.