1. Who removed Snake's clothes, put him in the coffin, and got "Guy X" - where, and when, was he hidden? - to wear Snake's clothes, and why did they do this?
uncertain who, possibly santa, idk where he was hidden, but they did it cuz Ace cant see faces and wanted to kill snake, so guy x wearing snakes cloths ace thought it was snake
2. In the big hospital room: initially, all RED's were 'disabled', by lack of a better word. I suppose this was already the case when the Nonary Game started? If not, who did this? Also, I forgot who put the missing 'things' back in. It couldn't have been June, because she was with Junpei the whole time. Was it Santa? I think so, because he was standing in the hospital room - but I'm not 100% sure.
no info on who put em back, prolly santa
3. Who 'resetted' all the puzzles? If the game nine years ago was played in the exact same building where Junpei played the Nonary Game - and I'm assuming this is the case, since I can't imagine June recreating everything from scratch -, who, then, re-locked all the doors, and when did they do it?
unknown i suppose, santa and june prolly, but as for when no idea
4. I'm content with the explanation that the real ship had already sunk 9 years ago - is it true, then, that there were only 9 people playing the Nonary Game this time? (Sounds logical, since the past June and co. are the ones who needed help.)
i believe so
5. So, in the end, the people who knew that June hadn't died are Seven, Santa, and June, right?
i think junpei knew
6. What's up with Seven's amnesia? Was it caused by June? I remember someone talking about one of Sheldrake's theories, stating that everyone's memories were stored not in their brain, but in an unknown extern space/thing/whatever.
Did June have access to Seven's (and, for that matter, everyone's?) memories?
Did she make him forget everything to make sure he wouldn't interfere?
If so, does this mean that Seven didn't ever know that June had only survived because of Junpei?
i was wondering bout seven's amnesia, never figured it out
7. How did June get 'access' to the building in the Nevada Desert? I mean - you'd think Ace and co. would have done something with it - sell it, or whatever. They wouldn't have left it alone, would they?
that is a good question
8. June; what was up with her getting a fever and vanishing all the time? Did she know some secret doorways? Wouldn't there have been the danger of the other players finding out about some of them?
dont know bout what was up with the fevers, perhaps there were secret doorways, prolly woulda been bad for other players to find em
9. What's up with her bracelet being flipped? Since she and Santa always got into rooms together, they might as well have made Santa 3, and June 6. I don't really see the reason for the change, except for the "June could be nine, which has the same effect as zero, therefore she could be Zero" fun.
her and santa were working together so they needed to be in the same room in each room, i cant recall a time where they were in separate rooms, if you ever went through door 3 you would have seen how santa bolted to get to the door before lotus and clover, if they were to have gone, the numbers wouldnt have added up correctly.
10. I'm guessing the real Alice was on the ship in the past?
i believe so
11. I've forgotten - was it Ace who killed the so-called captain in the Captain's Quarters?
Also, what was the reason for putting him there? Was there no other combination - by which I mean: was it possible for Ace never even having met the guy? I seem to remember Zero giving him a note of sorts that explained who the "Captain" was, and where he was waiting. ...also, I've forgotten who killed him.
the captain was one of the 4 members who did the original nonary game, he was a witness and ace could decide to confess his sins with the captain or win the game, ace killed him instead of confessing with him
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Splinter Cell: Chaos Theory