As Marko put (not so elegantly >.>), there is nothing to do now unfortunately. I didn't see the post initially, and even if I had I wouldn't have remembered this bit of info. We should have asked before you transferred, sorry. But you should be able to easily get things back to working order if you still have your SD set up.
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If you are talking about Wii save games, then yes, they should (assuming the vWii let's you copy them over).
Ok, I will do the Copy Paste and after tell if it succeeds.