You can clone with the digital version!
0_0 do you need a mod to be able to rip saves from the digital version ??
Would EmuNAND work in this case, too?
Are you asking if you can use the NAND dump for EmuNAND... Then, theoretically yes, but you can't actually use this EmuNAND if your 3DS is over 4.5 firmware (which it would be if you have Pokémon X/Y digitally on your realNAND)Would EmuNAND work in this case, too?