Neither Atmos nor SXOS has been updated to support 11.0.1 yet...not sure why you updated.
Ooops, missed that, disregard.Atmos works on 11.01
https://github.com/Atmosphere-NX/Atmosphere/releases
Patches:
https://github.com/ITotalJustice/patches/releases
All Gravy
Ooops, missed that, disregard.