Scratch that; I put a fresh copy of
Nintendont on my drive, and loaded up MegaMan X Collection as a test. Booted up to the main menu just fine, but when I exited the game with the Home Button on the CCP,
Nintendont crashed. Loading up
Nintendont again gives me a "Failed to load kernel" error. Meta.xml file is bad again.
I was having this issue a few months back, but it stopped for awhile. No clue why it just started up again. I guess I'll move my Nintendont app files to an SD and see if they fixes the issue. I really wanted to boot everything off of one USB HDD.