Off the top of my head:
Lufia: Curse of the Sinistrals
Blue Dragon: Awakened Shadow
Kingdom Hearts 358/2 Days
Kingdom Hearts Re:Coded (not out in English yet, will be soon)
Fighting Fantasy: The Warlock of Firetop Mountain
Phantasy Star Zero
Final Fantasy Crystal Chronicles (there's two of these IIRC)
Custom Robo Arena
Castlevania (there's 3)
Tales of Innocence (full English translation available)
Dragon Ball Origins (and DBO 2)
Rune Factory (3 of them)
Soma Bringer
That list has several different gameplay types included, but they're all RPGs (to at least some extent) and lack any kind of turn based fighting system. ToI has random battles, but they're real time. Hope this helps.