This doesn't seem to be taking different dumps into account - I tried 3 different dumps of Super Metroid on blargSnes only one works on my o3ds running via CIA install of the emu on my rxtools emunand, and only one, but a different one, works with blargsnes on homebrew launcher on 9.9 n3ds via ironhax launch.
Also, some games boot and run fine, but then won't boot at all another time.
Due to these points, I'd consider this project almost pointless... unless it's also including rom dump/hash check info and also including all hardware/launch method variables.
Gameyob: I've never had an issue with anything - everything I've thrown at it works, including lots of hacks.