Hey there. Been using RajNX for several weeks now, and it's working pretty well. If I want to play OkamiHD, I just have to reboot and disable LayeredFS, which I use for Breath of the Wild mods mostly. Works for me I guess. I do have one observation though. The Messenger does not boot up properly on RajNX, instead giving the error "software closed because an error occurred." I made sure this is a Raj Specific problem by reinstalling several times onto a different SD card and the nand, downloading and reinstalling from a different source, then I put ReiNX on an SD card and it played properly from the nand. Yep, this is a RajNX specific glitch. Just letting you know.
I've not run into this problem with any other games; any idea why this one is suddenly a problem?