I'm so sorry. I think most notorious are Daily Log, Age restictions and amiibo settings. Although it does happen (more rarely but even more annoying when that happens in other titles too, like Settings or in the login screen. I only have haxchi as of now, used to have CBHC at some point but decided to uninstall it after it started showing a black screen on boot sometimes.
Also maybe worth a mention is that at some point Super Mario Maker started to report that levels were deleted because of file corruption, which leads me to believe that the internal hdd is failing.