I know it's not very clear, but I am not swapping the screens. In the intro video, the TOP part of the animation is playing through the TOUCH screen. I placed the touch screen at the top so you could see that something was wrong. Same with the tower, Link should be at the bottom screen and the stairs on the top, yet the visuals flipped.Press ZL to swap screen from top to bottom, and like @tehrzky said i think this is how the game behave ? Maybe try on melonds to confirm this
As @tehrzky said though, turning off threaded 3d fixes it.










