That’s actually good news on both counts.
1) It corrected “something” so there’s a slight chance it fixed things for you. very slight but still. If it works we can stop everything here and you can enjoy your switch. If not…let’s keep going…
2) you have emunand data that we can back up to your PC.
A few things first:
Put your SDCard back in your switch
Download lockpick_RCM and inject it in RCM mode instead of Hekate or fusee.
Dump your keys and take note of where it says it stored prod.keys on the SDCard.
Eject your SDCard and put it in your PC and copy the keys to somewhere safe on your PC.
Restart NXNandManager and go to the tabs at the top and enter the location of your keys file so it can unencrypt things.
Now us NXNandManager to take a backup of your emunand.
You can backup you SDCard itself while we’re at it.
Now that you have secure backups you can format your SDCard to FAT32 w/ 32k block size using
rufus
Next follow this guide to get everything back up and running:
https://rentry.co/SwitchHackingIsEasy
once you’re back up you can restore things from your backup as needed. let’s get you back up and then see what’s missing that we need to recover.