Lol, MP with infrared? You know it's highly subjective to outer influences right? Also, it's pretty slow. (Only reason for Pokemon to be faster might be because it doesn't have to filter other devices for interuption, so setup of comms is faster, actual trading is done in a fraction of the animation).
And trading with GBC over IR wasn't that bad, just needed to have clean ports and something to cover the top of the area between them (we often used a playing card) to block sunlight.
I doubt there is a camera in there for aiming wiimote controls, but it has already been said(/rumoured) the DS/3DS will (/could) be used on the Wii-U.
The most annoying part of GC-GBA connection was getting enough GBA peeps AND enough cables. Also, it was mandatory and not optional. The 3DS could be used (in certain games bla bla/sometimes) instead of that tablet controller of the Wii-U imo.
Also, I kinda hope they make a VC/3DS eSHop remake of Four Swords Adventures (the GC game) since I never got to play that one much. Internet and voice-chat could be a lot of fun with it.