I sent this information in an email to gateway. I am posting it here for future reference.
Edit: Got a response
Original Post:
I have 6 retail 3DS carts. I dumped all of them, as well as their saves. I renamed them to .3dz, and renamed the saves to the proper titleid.
Of all of the saves, only one of them worked properly in Gateway mode, and it's Etrian Odyssey Untold: The Millenium Girl (U). This leads me to believe the following:
Game saves created and dumped on a 9.x sysnand console will not work in Gateway mode if they use >6.x save encryption, even if the console has sysnand 9.x. This seems wrong, because those same retail game saves do work in classic mode.
Below is the list of games and saves I dumped, and their properties.
Retail dumped saves that worked:
Edit: Got a response

I have 6 retail 3DS carts. I dumped all of them, as well as their saves. I renamed them to .3dz, and renamed the saves to the proper titleid.
Of all of the saves, only one of them worked properly in Gateway mode, and it's Etrian Odyssey Untold: The Millenium Girl (U). This leads me to believe the following:
Game saves created and dumped on a 9.x sysnand console will not work in Gateway mode if they use >6.x save encryption, even if the console has sysnand 9.x. This seems wrong, because those same retail game saves do work in classic mode.
Below is the list of games and saves I dumped, and their properties.
Retail dumped saves that worked:
- [5.1.0U] [Card 1] [512kb] Etrian Odyssey Untold: The Millenium Girl
- [8.1.0U] [Card 1] [512kb] Super Smash Bros. 3DS
- [7.2.0U] [Card 2] [000kb] Pokemon Alpha Sapphire
- [6.2.0U] [Card 1] [128kb] LoZ: A Link Between Worlds
- [6.1.0U] [Card 2] [000kb] Pokemon X
- [2.2.0U] [Card 1] [128kb] Super Mario 3D Land