No, you formatted sysnand without the card in, so it has a new ID folder in the Nintendo 3DS folder. Your emunand is using the old ID folder, which contains all the stuff you had on sysnand pre-formatting, so nothing is wasted; it is simply being used by your emunand nowThanks. I just formatted my sysnand with no card in there so emunand and sysnand would be unlinked
But now I am wondering, all the stuff I had installed to sysnand...is that now wasting storage space somewhere on my microsd card that I should be deleting?