Always use ROM tool to trim, but don't super-trim.
The way 3DS ROMs work is that the ROM size will always reach the cap of its tier, if the game size is within its range. For example, a 700MB game and a 900MB game will both be 1GB ROMs. The trimming removes all that empty space, so no data is lost but space is saved on your microsd.
The way 3DS ROMs work is that the ROM size will always reach the cap of its tier, if the game size is within its range. For example, a 700MB game and a 900MB game will both be 1GB ROMs. The trimming removes all that empty space, so no data is lost but space is saved on your microsd.