From what I vaguely understand, this should not be a problem because Nintendo never retroactively updates IOS files due to potential compatibility issues. I defer you to Marcan for the gruesome details:
http://hackmii.com/2009/02/why-the-wii-wil...get-any-better/
So the best Nintendo can do is to re-release SSBB with that particular exploit fixed. However it would not be possible for them to fix existing flawed copies. It might be a good idea to go out and buy a copy of SSBB right now. It could become very expensive to find, similar to how on the Xbox, MechAssault and 007 became hot commodities due to their softmod capabilities.