i was doing something with twilight, and when i finished with my SD card and put it back into the 3ds, my homebrew wasnt showing up. did i misplace a file?
Seriously, how is anyone supposed to answer that question unless you can be more precise about what "something with twilight" is supposed to mean?!
If I had to guess, your SD card is probably failing for one reason or another, because that is more likely to happen when the SD card is removed or inserted. Copy everything off the card (preferably with Roadkil's Unstoppable Copier, format the card, test the card with h2testw, and then copy everything back (provided the test finishes with no errors). That should hopefully fix it.
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