GX can do it with Hermes cIOS or with d2x v9+
when using the correct cIOS, you can go to HDD settings and set the "port" to "both"
Also, enable "multiple partition" settings if not working, I don't remember if it's automatically enabled when using both ports.
When using both ports/multiple partition at the same time, the "install partition" is used when dumping a new game.