Hacking TWiLight Menu Pokémon games not loading properly.

[Politel0l]

Whenever I start a Pokémon game using TWiLight Menu they look almost pixelated and some pixels are not even showing. I used the TWPatch to get widescreen and then the problems started happening . I thought it may have been from the TWPatches filters that are suppose to make games sharper, blurrier, etc. but I didn’t even try to change it. Any help?

 

[Politel0l]

To explain pixels not appearing, when playing Soulsilver, Black 2, and Platinum the eyes seem to disappear whenever I told and look forward. Looks really weird.