Hardware Multiple SD Card Conflicts?

AleronIves

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I hope this is the right forum to use, as I have a question regarding the use of multiple SD cards in the same 3DS with CFW. I wanted to use FBI to extract some old eShop music from my extdata, and I remembered that I still had the stock 4GB SD card that came with the console before I upgraded to a 32GB SD card. I updated Luma on the old SD card, powered on the 3DS, launched FBI, dumped the eShop extdata, and then powered off the system again.

It was then I realised there might be some kind of problem with plugging my regular SD card back into the system, since the old SD card is missing tons of software that I have installed on the regular SD card. Is switching back to my normal SD card going to cause any problems? I know some games have save data protection to prevent you from using multiple SD cards, but I didn't launch any games while the old SD card was connected; I only used FBI.

I thought I should ask just in case I needed to do anything before going back to my usual SD card. Thanks for reading!
 
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