As the title says i've been rebuilding my alpha sapphire game using 3DS Builder and convert to .cia but every time i successfully rebuild all my changes have been removed, i been using my romfs file for a while with hans but because i always get a black screen when i reset the game i am trying to put it into a cia but the changes that i have done to the game is turning dialga and lugia into primal dialga/shadow lugia, modified evolutions and trainer pokemon levels. any idea what could be causing this problem? i honestly don't get it since the romfs has already been modified and works fine with hans but in cia format it's somehow reading unmodified files that should not be there and i have also deleted the updates.
