If you plug your old Pokemon game into the Retron 5 and it still has a save, then perhaps. You'll need a way to run homebrew on your 3DS. You'll need to move the save from your Retron 5 to an SD card. Then plug that into a computer and use the tool I linked above to convert that save to the proper format. After that, rename the new save "sav.dat" and use Homebrew like svdt to inject it into your game. I'll leave some links to helpful threads here:
http://gbatemp.net/threads/svdt-save-data-explorer-manager.396562/
http://gbatemp.net/threads/helpful-3ds-homebrew-threads-links-always-updating.400950/
http://gbatemp.net/threads/svdt-save-data-explorer-manager.396562/
http://gbatemp.net/threads/helpful-3ds-homebrew-threads-links-always-updating.400950/