Not sure what value this has over the user made emulators but the same principles apply generally.
For the most part no. Flash carts are their own hardware that speak their own protocols which the firmwares/kernels expect to see. Most DS files released by them will also be update files, and dumps will tend to be for modern ones whatever bait and switch things people used to get past the DSi and 3ds blocks (
https://hackmii.com/2010/02/lawsuit-coming-in-3-2-1/ ) unless you manage to dump it from running hardware in which case better chance of things.
There have been a few that were hacked to work with emulators, but they will tend to be with the protocols removed or at least their failure points when it does not get the responses it expects sorted out such that people can make screenshots of their custom skins or get things for a review.
I am similarly not away of any user made multi menus outside of a very early homebrew only effort. There would be scope to make one. I have similarly not investigated any of the 2 in 1/X in 1 games you get sometimes which can also be targets for replacement of a few things on older systems, nor am I aware of any functional equivalents (stuff like the phantasy star collection on the GBA is 3 games with a menu to select which, you tend to meet these when you are trying to do cheats for them and having to find master codes which go away when the game is selected because it effectively wipes memory and boots something else).