I was a bit worried about that. I used to have my EmuNAND set up through MenuHax, so it would launch automatically when I started the system. However, when I tried to fix my eShop access the first time with a different guide, I accidentally formatted my SysNAND by mistake and wiped out MenuHax entirely. For some reason, it didn't seem to want to reinstall, so I've been using BrowserHax. When I finish the games I'm playing now (just to be on the safe side in case I screw up again and wipe my save data) I'm going to install A9LH, so it'll auto-boot again.
Anyways, I've already got a Homebrew Launcher version of Decrypt9, so if it can access EmuNAND from there, I should be ready to go anyways. Thanks for the help.