DIOS MIOS (Lite) doesn't allow disc swapping (yet?).
So you have to save at the end of Disc1, then reboot and load disc2.
Games that don't let you save at the end of Disc1 need another loader (Swiss, or devolution).
USBLoaderGX 1201 does not have proper disc detection yet, it sees both of them, but always launch one of the two (and sometime it's always Disc2 which is launched, it depend the alphabetic path order where you stored the game).
Currently, you can use Wiiflow, or if you really want GX you delete disc1 and dump disc2 when you need it.
@[member='CaptainZef']:
Which version of DIOS MIOS and which version of USBGX?
you need USBGX 1201 > go to setting > loader setting > DM(L) version > specify which version of DM(L) is installed.
Or wait for 1202 which have version auto-detection.