The TSS (stands for Tatsu Signing Server, but is always referred to as the redundant "TSS server" as opposed to just "TSS.") server is what iTunes talks to in order to get a confirmation that it's okay to update or restore a device. You click Restore in iTunes, iTunes asks the TSS server if it's okay to restore to this iOS version, the TSS server responds back to iTunes, the iTunes will either begin your restore if the TSS server allows it, or throw you an error code if it doesn't.
Cydia includes a service emulates Apple's TSS server. In order to do so, it needs some things before-hand that it grabbed from Apple's TSS server at the appropriate time. For iOS 3 and 4, all it needs is the SHSH, which is basically a thumbs up from the TSS server. There's no issue there. However, iOS 5 introduced something new.
In iOS 5, the old SHSH method of verifying restores was all but thrown out for the new, more complicated APTicket method. APTickets need more information to be useful than SHSHs, and iOS 6 APTickets need even more. Cydia, partially due to Saurik's unfamiliarity with the APTicket, did not grab all that required information for the iOS 6 APTickets, so the APTickets it backed up are essentially useless.
It's really not much of an issue for anyone. If your device is not vulnerable to the limera1n exploit, there was absolutely nothing you could do with the iOS 6 APTickets, even if they were backed up correctly. There are no exploits for these devices that allow them to be restored to a firmware Apple is signing besides MuscleNerd's re-restore for iOS 5 and the iPad 2's restorability with iOS 4 SHSHs backed up (neither of these methods use iOS 6 APTickets in any way). For older devices that are vulnerable to the limera1n exploit, you can use iFaith or redsn0w (you'll have to wait for the next version of redsn0w, though) to get all the missing TSS information from your device and upload it to Cydia, thus completing the backed up APTickets and making them usable.
So no harm no foul, unless some dev out there finds an exploit that allows restoring the iOS 6 using APTickets, but even then, he would probably just hold the exploits until iOS 7.