I made a guide for the theme settings part of the program to help anyone figure out where exactly the colors are going, some of the stuff I am still trying to figure out, and will try to update.
This is what I have so far:
Cursor: The selection cursor on the bottom screen that you control with the D-pad or Analog controls. The second and fourth box control the strobe color change effect, the 2nd box is the first color and the fourth box the next color. The fourth box also controls the color effect that happens when you select an item on the bottom screen.
3D Folders: The 3d folder that appears on the top screen when you have a folder selected. This is only the folder part, the paper inside the folder is the "Files" location. The first box is the folder shading, the second box is the actual color of the folder.
Files: This controls the 3d folder's "paper" that's located in the 3d file on the top screen, as well as the bottom screens "paper" that's in the folder icon. This also controls the color of the background of the top screens 3d icon of DS emulated games. On the bottom screen's "paper" color in ascending order from bottom to top, box's 1-3. The top screen's 3d "paper" color, and the DS emulated icon is box 2 only.
Arrow Button: These are the buttons on the far left and right sides of the bottom screen with an arrow in the middle. The first box controls the shaded area, the second the main color, the third box controls the outside rim color.
Arrow: This controls the color's of the arrow located in the "Arrow Button". The first box is the outside border color, the second box is the main color, the third box is the color the arrow turns when you use the touch screen to press the button.
Bottom Btns: This is the bar on the bottom of the bottom screen that says "Open". The first box color is the bottom shading and the button color when its pressed, the second box is the main color of the button, the third box is the top border color of the button and also the color the button turns when you press open or close, the fourth box is the text bottom layer shading, the fifth box is the main text color, the sixth box is the color when you press the arrow button on the touch screen.
Close Button: The "close" button on the bottom screen when you exit a game, The first box controls the bottom button shading, the second box controls the buttons main color, the third box controls the buttons top border color, the fourth box ?, the fifth box controls the color of the text, the sixth box controls the text color when the button is pressed.
Game Text:
Bottom Solid:
Bottom Outer:
Folder BG: This controls the colors inside a folder and the empty slot "boxes". The first box is the empty slots top border shading, the second box is the main color background of the folder, the third box is the empty slots main box color, fourth box ??
Folder Arrow: ??
Icon-resize: This controls the colors of the top left and right buttons on the bottom screen. One button controls the 3ds theme options, the other controls the icon-resize properties. The first box controls the secondary button border color, the second box controls the buttons main color, the third box controls the overall button border color and main button top shading, the fourth box controls ??, the fifth box controls the middle icons main color, the sixth box controls middle icons main shading and the color of the effect when pressed, the seventh color ??
Top Overlay: This controls the colors of the buttons in the left and right bottom corners of the top screen. The first box controls the main button color, the second box ?, the third box ?, the fourth box controls the middle icon colors.
Demo Msg:This controls the bottom screen text color and bottom shading of the demo message. The first box controls the shading color background, the second box controls the text color "uses remaining: #" message.