I got everything - all files and games - on SD (the emulator-plugins remembered settings bevore, but after I replaced them with the compiled ones they won't anymore... I only changed their colour...)yeah inside emulator folder that's fine
do you have wiiflow on sd and emulator roms on usb?
I use WiiFlow-MMod 1054,
VbaGX-plugin 2.2.8,
FceuGX-plugin 3.3.1
and Snes9xGX-plugin 4.3.2.
And I got their sources from
googlecode > svn > branches > Plugins
After compiling I got .dol-files.
I named them exactly like the .dol-files inside the Wiiflow-plugins folder (SD/wiiflow/plugins).
Then I replaced the old ones (vbagx-mod12.dol, fceugx-mod11.dol and snes9xgx-mod11.dol).
Wiiflow starts, the emulators load my games and look good, I can change the settings for cropping, timing etc.
But after leaving a game and re-entering it, all settings are back to default...