Sounds like Pokemon: Brilliant Diamond and Shining Pearl. Back when the those came out, if you bought the 1.0.0 versions physically, you didn't get the full game. You were able to play all the way up to the elite four, but the post game contents were not accessible at all, unless you updated the games. What's worse is the fact there have been multiple revisions of the physical releases thereafter, every single one of which had the full game baked into the cartridge. So basically, every physical version owner who has 1.0.0 got totally screwed right out the gate, unless you went out and bought another physical copy of the game again. I was given a copy of Shining Pearl for free, and it's the 1.0.0 version. I don't think majority of people who bought the game knew this, probably still doesn't know this (until now after reading this), primarily because everyone eagerly updated the games day one. Not even services like
DoesItPlay? knew this then, and they probably still don't (seems like they only mention the latest versions of the games on their site anyway, so they definitely won't know this now).
Edit:
Just checked up on Wolfenstein II, that's a regular Nintendo Switch title, not a Nintendo Switch 2 title. This thread is dedicated to the Nintendo Switch 2 line of software. I will say though that I stumbled on the original release version and the Limited Run Games version you mentioned. The original version was a download code only "physical" release. The Limited Run Games version is a true physical version as you stated. Neither of them are Nintendo Switch 2 software though, so adding that to the list wouldn't make sense here.