Yes all the file locations were changed. Sorry should have mentioned that.Make sure you have the apps inside of your wiiu folder. If you need the SD card contents you can access them from folder B here
https://mega.nz/#!TUFAWIbB!HXlRsJu5xN_LZMUDOo5BU3zsdxamH8zh0u0xLwBojNk