For some titles, it depends on the what the game is and how you played it before.
For example: Pokemon X played using Gateway classic mode will have a valid save that can be played after you dump the ROM. However, if you have Pokemon X that has been played only on a retail unit without the Gateway exploit, the save will always come up as corrupt no matter what you do.
Without knowing more specifics about what you are trying to dump, how you have played it before, etc, the amount of advice that we can give is limited to just generalities.
Oh ... Thanks for the precision of explanation
I have games, but the four I liked to play again in multirom are :
R.E Revelations
R.E Mercenaries
MGS 3D
Zelda Ocarina
These games I bought were all before the Gateway stuff. So no playing session on a EMUNAND or anything
EDIT : I will try launch them on Classic Mode and backup again the .sav and try again
EDIT 2 : Still Not Working after a saving state on EMUNAND =(
Maybe in the next days we will see a dev making a little soft for converting these SAV or a Gateway update recognizing them again ?
Wait N See ^^