Hmmmmm.... I'll start from the beginning to see if that helps...
What I did
1) I got Ocarina of Time, cartridge.
2) I downloaded the correct .bin, firmware 11.0.0-33U
3) I inserted the installer into (SD CARD)/3ds/oot3dhax_installer
4) I loaded the .bin file, containing the save file
5) I booted...