NES
NEStopia (Retroarch)
SNES
Snes9x GX or Snes9x Retroarch
Genesis, Master System, Sega CD, Game Gear
Genesis Plus GX
TurboGrafx-16, Turbo CD
Mednafen PCE Fast (Retroarch)
Game Boy, Game Boy Color, Game Boy Advance
mGBA
N64
Virtual Console
Arcade
FBA 2012 or Mame 2000. There are Mame 2003...
Ocarina doesn't use the epilepsy filter
auto
Just checked with a modified wad on my wii. Flicker filter is enabled on n64 vc games.
It looks sharper with the filter disabled on a crt, but there's a lot of flickering
Mario Tennis doesn't use the filter. The title screen looks a bit dark (caps at RGB 216), but the game runs at full brightness.
EDIT: Re-tested Mario Tennis. As @MaeseJesus mentioned, it uses the darken filter. I'll add the offset to my previous comment.
After checking all NTSC N64 VC games using a histogram, I found that only five of them use the darken filter. The games are:
Cruisn' USA (RGB > 199)
Hex Offset: 46CBC
Mario Kart 64 (RGB > 190)
Hex Offset: 46DB8
Mario Tennis (RGB > 216)
Hex Offset: 2C960
Super Mario 64 (RGB > 190)
Hex Offset...
if they get permission from 4j (the studio who helped put minecraft on consoles), they could put the console edition tutorial worlds in the game, as seeds
and i mean all of them (if not, maybe a few highlights, like TU1, TU31, and TU69)