Don't worry.
If you update with Zelda I can be 100% sure it won't be 3.0.1
That is, of course, if you are planning on just putting the cartridge and not actually downloading any updates.
If that is, then yeah, you will get 3.0.1
But i should update the game, right? surely they patched lot of things since launch (new thread:"should i update to play zelda...")