No, I have it installed to app under that path. I've made sure and even tried deleting files that were being overwritten in case they weren't uploading right. Strange that this hasn't happened before...
I think the work behind this tool is great and all, but I'm having some problems getting my custom song to display in the game. It doesn't show up at all... I copied the resource folder to the app folder on my vita after the tool had finished but for some reason, it hadn't shown up. I've tried...