That’s because you require dip switch setting dialogue for those games, which is a physical hardware setting on the original cabs. FBA does support it, not sure where it is in the Switch outting . If you discover it do update this thread
Make sure joycons are docked to the unit , doesn’t work outside of it. Test menu on arcade works for me (see files) using the combination above, cps3 sfiii.zip (3rd strike) i can change to free play, difficulty etc