Huh, maybe I did end up having a filesystem corruption. Didn't think much of it other than I was a dumbass since I thought I screwed up something during an FTP transfer, drag and dropped root over a folder and everything went poof.
I mean I have pretty much all my NSPs installed already that I want( can hold with my 128GB ), is it as simple as drag and dropping onto the computer and back onto the Switch after formatting the SD card to FAT32?
And does it need to be done through the Switch or will Windows Format work?