I dont see an option to disable or enable the specific settings,
And it is the correct US version. I am running it on a linux / steam deck if that helps.
I did indeed put it in the folder ending in 6001. I dumped 6001 (BK1), ran the patch and put the folder under */emulation/storage/yuzu/load/0100C07018CA6001 and I still get the game in japanese.