That happened to me as well with Palkia. For me though, I followed the bot's steps and disabled the pss and saved right after before resuming the bot which allowed it to work like normal.
Thanks for the reply!
My wifi is pretty good and I leave the n3ds in pretty close proximity to it, so I'm not sure that's the problem. Even so the error keeps persisting. The error has happened about 50 times in a row. So I've got some logs. From what I can glean from the logs, the bot seems to...