Only just found out about the hate messages! I recently updated Hekate to v5.6.5. on an unrelated subject in wondering if it's caused an issue??
I also updated Atmosphere (but that wasn't affected).
Anyway I was in tinfoil which installed fine and I didn't get the red message of Doom and gloom I got on the last version.
There's a navigation panel on the left. In the section labelled payloads you can see (and launch Hekate). It also sees atmosphere and lockpickrcm but not tegra. So I launched Hekate.
Anyway later that day I found my Hekate was version 5.6.2 which was the really odd. As I'd updated from 5.5.7.
I don't know 100% it was Hekate or tinfoil that changed it. I'd also launched tegra explorer the day previous as I bought a new joypad. Basically there's a script tegra can run called syncfix. It synchronises your Bluetooth and WiFi settings from the sysnand to the emmunand.
But all I did from both these apps was reboot into a payload. It shouldn't be overwriting my setup.
I've fixed the issue, but I'm baffled by this.
Currently I've got all my payloads in the bootloader/payload folder. And now I'm only trusting atmosphere (payload launcher) and hekate to launch them. Anything else I'll reboot to RCM.
If anyone can shed any light on this let me know.
Also do any of the other installer allow you to add the shops? I'll get another installer anyway... But if it's got this feature I might abandon ship fully.