I copied the file back over, it runs at normal speed without NTR running, when the patch is running it is extremely slow. Whatever it is in that file it slows it down for some reason.
I went back one version of the Marriage_A file again, and it is running at normal speed. Strange.
Just to be sure, I ran chkdsk over the SD, it is fine.
I guess the important thing is that it is working.
The order is still off though, Lisette speaks first when the player is meant to.
(Marlena just called me the groom too)
Edit: I just copied the SoSToT files across and turned on game patching within Luma and renamed the directory within NTR (I use it for screenshots, so wanted to disable the game specific patch) and the position of the player and Lisette has changed (if my memory serves me correctly, it is 6am..), and the dialogue is correct.