Sky can just run Ninjhax, so nothing extra is gained from that.
In any case, you can't just copy an EmuNAND to another console, you can't use the eShop/System Transfer patch on EmuNANDs, there is no 9.5 EmuNAND on N3DS to begin with and as already stated once on 9.5 we can't patch things (even if we could patch EmuNAND in the first place).
Manually transferring what you can or giving up on unauthorized code are your only options at this point in time, as far as I'm aware.