Update! Here are some of the fixes that will take place in v3 which should be released this weekend.
QUOTE said:Bug Log (v3):
Toxic Orb - FIXED
4 Moves / TM-HM - FIXED
Shop Money amount - FIXED
Little by Little - FIXED *1
Pokéshifter - FIXED *2
Battle Subway - BROKEN *3
1: Move changed to "Bit by Bit"
2: Original files returned.
3: It's only broken if you encounter a certain trainer. Which is the one here.
That's the current v3 status.