Gaming New 3DS XL all downloaded games unsorted

[dudenator]

I just bought a New 3DS XL today and did a system transfer from my old 3DS. Ever since then, every time I turn the New 3DS off and on, a message comes up and says there's new content on the home menu, and every one of my games is unsorted from it's folder and put into a gift box to unwrap. Also, my theme is turned off every time this happens. It's pretty annoying since I have close to 50 games sorted into folders, anyone know why this happens?

Edit: I tried formatting my Micro SD and that fixed the problems, until I went into the Theme Shop and downloaded an update and the themes I purchased today, then the problems resurfaced. Seems like the theme shop is the culprit.

Edit 2: Fixed the problem, I had a G-Skill 32GB Micro SD and I swapped it out for a 16GB Samsung SD and the problem is gone. If anyone else has this problem, swap SD cards, it might just fix it.

 

[Lucifer666]

that's really, really strange

are you using any flashcart and/or emunand on either system?

 

[dudenator]

Nope, neither console is using emunand. This content was transfered from an emunand once, but this problem never occurred on any other console than the new 3DS.