Maybe stupid question, but I have used the 3DS Guide to create a CFW on my N3DS XL.
However when updating it to the newest version I don't see the Majora's Mask game anymore.
I have never downloaded or registered a Nintendo ID on the N3DS since I straight away updated it and flashed it with CFW at the time.
Is there a way to still get the game?
I had the same thing happen about a year ago now, however with Ocarina of Time. I bought the Ocarina of Time 2DS special edition as a second modded system, and they were really cheap, also years ago my original 3ds was stolen with OoT from my car (I think). My only means to play OoT is the Gamecube version on my wii, however don't have my wii hooked up much anymore, so figured it would be killing 2 birds with one stone buying the special edition.
I don't remember even wondering why it disappeared until 4 or 5 months later when I wanted to start a new game, then I relised the system never had it installed that I remembered, it may have even came factory sealed without it, however I doubt that. I'm guessing it disappeared in the CFW process somehow. Really sucks since I know from experience that it shouldn't happen, nor does it, usually. I do know I never once even started the game on the 2ds or remember seeing it. I made a backup but doesn't help.
EDIT - I guess I can try looking for it in the SD files mentioned above. I may have switched SD cards with it at one point, hope it doesn't affect anything. I haven't even been using it cause I have like 20 SD cards and don't know witch is witch, I have to go through them lol. Seriously though, why did they ever make 2, 4, 8 GB SD cards and USB's, even still today, it's annoying after you have a giant collection, I have so many I started making custom labels.